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@OHDSI Observational Health Data Sciences and Informatics

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    321 repositories

    • TheBookOfOhdsiInJapanese

      Public
      A translation of https://github.com/OHDSI/TheBookOfOhdsi into Japanese
      R
      •
      Creative Commons Zero v1.0 Universal
      •4•1•0•0•Updated Mar 13, 2025Mar 13, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •170•135•128•24•Updated Mar 12, 2025Mar 12, 2025

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •32•39•20•1•Updated Mar 12, 2025Mar 12, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •141•279•214•20•Updated Mar 12, 2025Mar 12, 2025

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •50•43•28•2•Updated Mar 12, 2025Mar 12, 2025

    • webapi-shiny

      Public
      [Under development] Holds dependencies for WebAPI Shiny apps
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • EvidenceSynthesis

      Public
      An R package for combining evidence from multiple sources (e.g. multiple data sites)
      hades
      R
      •8•8•3•0•Updated Mar 12, 2025Mar 12, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Mar 12, 2025Mar 12, 2025

    • Hades

      Public
      Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
      hades
      R
      •
      Apache License 2.0
      •13•24•15•5•Updated Mar 12, 2025Mar 12, 2025

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•15•0•Updated Mar 12, 2025Mar 12, 2025

    • Broadsea

      Public
      Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
      R
      •
      Apache License 2.0
      •64•79•46•5•Updated Mar 11, 2025Mar 11, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•27•0•Updated Mar 11, 2025Mar 11, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•1•11•1•Updated Mar 11, 2025Mar 11, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•8•1•Updated Mar 11, 2025Mar 11, 2025

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•26•1•Updated Mar 11, 2025Mar 11, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •16•16•0•1•Updated Mar 11, 2025Mar 11, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•2•47•4•Updated Mar 11, 2025Mar 11, 2025

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•3•26•0•Updated Mar 10, 2025Mar 10, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      R
      •90•190•29•3•Updated Mar 10, 2025Mar 10, 2025

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•39•3•Updated Mar 10, 2025Mar 10, 2025

    • Capr

      Public
      Cohort definition Application Programming in R
      hades
      R
      •
      Apache License 2.0
      •14•17•6•2•Updated Mar 8, 2025Mar 8, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•17•2•Updated Mar 8, 2025Mar 8, 2025

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•62•4•Updated Mar 7, 2025Mar 7, 2025

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•11•72•2•Updated Mar 7, 2025Mar 7, 2025

    • gaiaDB

      Public
      A staging database and collection of transformation recipes for public place-based datasets
      R
      •0•1•34•0•Updated Mar 7, 2025Mar 7, 2025

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      HTML
      •459•927•75•3•Updated Mar 7, 2025Mar 7, 2025

    • InspectOMOP

      Public
      InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.
      Python
      •
      GNU Affero General Public License v3.0
      •2•14•0•1•Updated Mar 6, 2025Mar 6, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •124•135•52•5•Updated Mar 5, 2025Mar 5, 2025

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Mar 5, 2025Mar 5, 2025

    • d2e

      Public
      [Under development] D2E is an end-to-end solution for management of OMOP data
      Apache License 2.0
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025