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    • ABC-Enhancer-Gene-Prediction

      Public
      Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
      Python
      •
      MIT License
      •66•216•5•0•Updated Mar 15, 2025Mar 15, 2025

    • 2021_09_01_VarChAMP-data

      Public
      Image analysis profiles for VarChAMP project
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Mar 15, 2025Mar 15, 2025

    • hidive

      Public
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•5•1•Updated Mar 15, 2025Mar 15, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationcloudbioinformaticsscalaexecutorhpccontainerswdlga4gh
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •359•1k•743•46•Updated Mar 14, 2025Mar 14, 2025

    • cellpainting-gallery

      Public
      Cell Painting Gallery
      Other
      •13•77•9•5•Updated Mar 14, 2025Mar 14, 2025

    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•11•7•0•Updated Mar 14, 2025Mar 14, 2025

    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      •
      Other
      •0•5•1•15•Updated Mar 14, 2025Mar 14, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •102•210•5•19•Updated Mar 14, 2025Mar 14, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•0•Updated Mar 14, 2025Mar 14, 2025

    • depmap_omics

      Public
      What you need to process the Quarterly DepMap-Omics releases from Terra
      data-sciencecancer-genomicscloud-computingdepmap
      HTML
      •22•114•3•8•Updated Mar 14, 2025Mar 14, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•7•0•13•Updated Mar 14, 2025Mar 14, 2025

    • juniper0

      Public
      Preliminary Version of JUNIPER: Large-Scale Outbreak Reconstruction
      R
      •
      MIT License
      •0•5•0•0•Updated Mar 14, 2025Mar 14, 2025

    • lembic

      Public
      Distilling some data for CFDE
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • chronos

      Public
      Modeling of time series data for CRISPR KO experiments
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•31•2•0•Updated Mar 14, 2025Mar 14, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •602•1.8k•1.2k•133•Updated Mar 14, 2025Mar 14, 2025

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      genomicsgenomesexomeshail
      Python
      •
      MIT License
      •29•93•8•9•Updated Mar 14, 2025Mar 14, 2025

    • scp-ingest-pipeline

      Public
      File Ingest Pipeline for Single Cell Portal
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•1•Updated Mar 14, 2025Mar 14, 2025

    • gnomad-constraint

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated Mar 14, 2025Mar 14, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•26•0•12•Updated Mar 14, 2025Mar 14, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •47•81•157•13•Updated Mar 14, 2025Mar 14, 2025

    • 2022_09_07_New_phenotypic_dye_testing_CDoT_Broad_Analysis

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • 2025_varchamp_snakemake

      Public
      Jupyter Notebook
      •0•0•1•0•Updated Mar 14, 2025Mar 14, 2025

    • depmap_omics_upload

      Public
      Subset and upload data to taiga for DepMap data releases
      Python
      •
      The Unlicense
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • viral-pipelines

      Public
      viral-ngs: complete pipelines
      WDL
      •
      Other
      •28•61•24•18•Updated Mar 14, 2025Mar 14, 2025

    • shared-workflows

      Public
      GitHub Action workflows that can be shared by multiple repositories
      BSD 3-Clause "New" or "Revised" License
      •1•0•3•0•Updated Mar 14, 2025Mar 14, 2025

    • BEClust3D

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•8•Updated Mar 14, 2025Mar 14, 2025

    • ops-terra-utils

      Public
      Python
      •0•4•0•4•Updated Mar 14, 2025Mar 14, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•8•Updated Mar 14, 2025Mar 14, 2025

    • chbv

      Public
      HTML
      •
      MIT License
      •0•0•13•0•Updated Mar 14, 2025Mar 14, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•128•30•21•Updated Mar 14, 2025Mar 14, 2025