Merge pull request #10 from nasa-jpl/dev/pytests #17

	name: Build C code and run tests

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build-and-test:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v3
	with:
	submodules: recursive
	lfs: false

	- name: Restore LFS cache
	uses: actions/cache@v3
	with:
	path: .git/lfs
	key: lfs-${{ runner.os }}-${{ github.sha }}
	restore-keys: \|
	lfs-${{ runner.os }}-

	- name: Fetch only needed LFS files
	run: \|
	git lfs install
	git lfs fetch --include="tests/gold_standard_data/**"
	git lfs checkout

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y \
	libpng-dev \
	libyaml-dev \
	libgsl-dev \
	libgdal-dev \
	libopencv-dev \
	cmake \
	build-essential \
	python3-dev

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install pytest
	cd scripts/python
	pip install -e .

	- name: Configure and build C code
	run: \|
	mkdir -p build
	cd build
	cmake -DWITH_OPENCV=ON ..
	make -j$(nproc)

	- name: Run pytest tests
	run: \|
	pytest --maxfail=3 --tb=short

	- name: Run gtest tests
	run: \|
	ctest --output-on-failure

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