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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 782 160

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 300 47

Repositories

Showing 10 of 370 repositories
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 2 Updated Mar 13, 2025
  • gehlenborglab-website Public

    Code for Gehlenborg Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 9 MIT 39 12 3 Updated Mar 12, 2025
  • pic-sure-metadata-curation Public

    Parse and generate variable-level data to be exposed through the search interface.

    hms-dbmi/pic-sure-metadata-curation’s past year of commit activity
    SAS 2 Apache-2.0 2 0 0 Updated Mar 12, 2025
  • udi-training-data Public

    code for generating training data used for fine-tuning the LLM

    hms-dbmi/udi-training-data’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 12, 2025
  • pic-sure-hpds-genotype-load-example Public
    hms-dbmi/pic-sure-hpds-genotype-load-example’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 1 0 0 Updated Mar 12, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 9 Updated Mar 12, 2025
  • udi-data-api-testing Public

    For testing the code generated for getting api data

    hms-dbmi/udi-data-api-testing’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • vizarr Public

    A minimal Zarr image viewer based on Viv.

    hms-dbmi/vizarr’s past year of commit activity
    TypeScript 142 MIT 18 19 (1 issue needs help) 6 Updated Mar 12, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 2 MIT 0 0 2 Updated Mar 11, 2025
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure’s past year of commit activity
    HCL 5 Apache-2.0 1 0 2 Updated Mar 11, 2025
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