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@bcbio

Blue Collar Bioinformatics

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Hi there 👋

🙋‍♀️ Welcome!

This project started in the Harvard Chan Bioinformatics Core as a framework to analyze sequencing data. We have migrated the vision to contain templates for downstream analysis of nf-core pipelines

Check committee meetings notes 📝

👩‍💻 Useful resources

Here we list all the reports we mantain currently:

🌈 Contribution guidelines

Thank you for considering contributing to our project! We welcome contributions that enhance the functionality, usability, and reliability of this repository, dedicated to providing template reports for performing downstream analysis of genomic data.

Fast Contributions:

  1. Go to the report specific repostiory
  2. Report an Issue: If you encounter bugs, have a feature request, or see opportunities for improvement, please open a draftissue in the project board, or an issue in the specific report repository listed above.
  3. Improve Documentation: Contributions to improve documentation, such as correcting typos or adding examples and explanations, are always welcome.
  4. Code Contributions: If you want to contribute code, please read the guidelines below to ensure your contribution can be smoothly integrated.

Full guidelines

🍿 Fun facts

Too many to list here!

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  1. bcbioR bcbioR Public

    R package with well defined templates for most common pipelines

    R 12 3

  2. rnaseq-reports rnaseq-reports Public template

    code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines

    R 5 2

  3. bcbioR-test-data bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    R

  4. singlecell-reports singlecell-reports Public template

    code templates and training materials to perform downstream analysis from scRNA preprocessing

    R 2

Repositories

Showing 10 of 26 repositories

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