Tag New Release of 0.4.0

CHANGELOG.md

@@ -5,6 +5,32 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
+
+## [0.4.0] - December 1st, 2023
+
+Patch release to add in some new features and fixes 
+
+### Added 
+
+- Added Getters that return Cohort information
+
+  *  GetDatabaseCohorts 
+
+  *  GetCohortSubjects
+
+  *  GetCohortSubjectEndDate 
+
+  *  GetCohortSubjectStartDate 
+
+- Misc
+
+  * Changed GetDrugExposures to GetDrugExposureIDs
+
+  * Added GetVisitProcedure in getters
+
+- Extensive test suite for new features
+
+
 ## [0.3.0] - August 25th, 2023
 
 New minor release to introduce some new functionalities and novel extensions of the API

CITATION.cff

@@ -8,7 +8,9 @@ authors:
     given-names: Varshini
   - family-names: Abdelazeez
     given-names: Fareeda
-title: "OMOPCDMCohortCreator 0.3.0"
-version: 0.3.0
+  - family-names: Sanjay
+    given-names: Jay
+title: "OMOPCDMCohortCreator 0.4.0"
+version: 0.4.0
 doi: 10.5281/zenodo.7052105
-date-released: 2023-08-25
+date-released: 2023-12-01

Project.toml

@@ -1,7 +1,7 @@
 name = "OMOPCDMCohortCreator"
 uuid = "f525a15e-a73f-4eef-870f-f901257eae22"
-authors = ["Jacob Zelko <[email protected]>", "Fareeda Abdelazeez", "Varshini Chinta"]
-version = "0.3.0"
+authors = ["Jacob Zelko <[email protected]>", "Fareeda Abdelazeez", "Varshini Chinta", "Jay Sanjay <[email protected]>"]
+version = "0.4.0"
 
 [deps]
 DBInterface = "a10d1c49-ce27-4219-8d33-6db1a4562965"

docs/src/api.md

@@ -24,9 +24,14 @@ GetMostRecentConditions
 GetMostRecentVisit
 GetVisitCondition
 GetDatabaseYearRange
-GetDrugExposure
+GetDrugExposureIDs
 GetDrugConceptIDs
 GetDrugAmounts
+GetDatabaseCohorts
+GetCohortSubjects
+GetCohortSubjectStartDate
+GetCohortSubjectEndDate
+GetVisitProcedure
 ```
 
 ## Filters

docs/src/tutorials/beginner_tutorial.md

@@ -108,7 +108,7 @@ For the patients who have strep throat diagnoses, find their race.
 Suggested solution:
 
 ```julia
-strep_patients_race = occ.GetPatientRace(strep_patients, conn)
+strep_patients_race = occ.GetPatientRace(strep_patients.person_id, conn)
 ```
 
 ### Task: Find the Gender of Patients with Strep Throat

src/executors.jl

@@ -11,11 +11,13 @@ Function that executes an audit on a dataframe that must contain a `count` colum
 
 - `hitech::Bool` - a boolean that enforces HITECH standards for privacy preserving methods.
 
+- `target_column::Symbol` - the name of the column to target for auditing (default set to :count).
+
 # Returns
 
 - `df` - a `DataFrame` that is appropriately audited per a given standard
 """
-function ExecuteAudit(data::DataFrame; hitech = true)
+function ExecuteAudit(data::DataFrame; hitech = true, target_column = :count)
     df = hitech && filter(row -> row.count >= 11, data)
 
     return df

src/filters.jl

@@ -282,4 +282,4 @@ function StateFilterPersonIDs(states; tab = location, join_tab = person)
 
 end
 
-export VisitFilterPersonIDs, ConditionFilterPersonIDs, RaceFilterPersonIDs, GenderFilterPersonIDs, StateFilterPersonIDs
+export VisitFilterPersonIDs, ConditionFilterPersonIDs, RaceFilterPersonIDs, GenderFilterPersonIDs, StateFilterPersonIDs