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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 351 151

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 413 repositories
  • deep-neurographs Public

    A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 4, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 3, 2025
  • DemoMkdocsSite Public

    Demo site for documentation. Focused on having nested repositories and building with mkdocs

    AllenInstitute/DemoMkdocsSite’s past year of commit activity
    0 0 0 0 Updated Feb 3, 2025
  • sciduck Public
    AllenInstitute/sciduck’s past year of commit activity
    Jupyter Notebook 1 4 5 0 Updated Feb 3, 2025
  • DemoMkdocsOpenAPI Public

    Repository to be nested in DemoDocumentation

    AllenInstitute/DemoMkdocsOpenAPI’s past year of commit activity
    0 0 0 0 Updated Feb 3, 2025
  • scrattch.bigcat Public

    iterative clustering pipeline of big single cell datasets.

    AllenInstitute/scrattch.bigcat’s past year of commit activity
    R 27 10 4 0 Updated Feb 3, 2025
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 5 BSD-3-Clause 0 0 3 Updated Feb 3, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 288 11 Updated Feb 3, 2025
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 282 BSD-3-Clause 89 58 10 Updated Feb 3, 2025
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