modules.json

{
    "name": "sanger-tol/genomeassembly",
    "homePage": "https://github.com/sanger-tol/genomeassembly",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "bcftools/concat": {
                        "branch": "master",
                        "git_sha": "582ff1755bdd205c65e2ba4c31e0a008dae299ec",
                        "installed_by": ["modules"]
                    },
                    "bcftools/consensus": {
                        "branch": "master",
                        "git_sha": "fa12afdf5874c1d11e4a20efe81c97935e8eea24",
                        "installed_by": ["modules"]
                    },
                    "bcftools/index": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bcftools/norm": {
                        "branch": "master",
                        "git_sha": "0435e4eebc94e53721c194b2d5d06f455a79e407",
                        "installed_by": ["modules"]
                    },
                    "bcftools/sort": {
                        "branch": "master",
                        "git_sha": "4a21e4cca35e72ec059abd67f790e0b192ce5d81",
                        "installed_by": ["modules"]
                    },
                    "bcftools/view": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bedtools/bamtobed": {
                        "branch": "master",
                        "git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/bedtools/bamtobed/bedtools-bamtobed.diff"
                    },
                    "busco": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bwamem2/index": {
                        "branch": "master",
                        "git_sha": "bfed129da5134b4439b1821c917972570d44d39c",
                        "installed_by": ["modules"]
                    },
                    "cat/cat": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "cooler/cload": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "cooler/zoomify": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "custom/dumpsoftwareversions": {
                        "branch": "master",
                        "git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543",
                        "installed_by": ["modules"]
                    },
                    "fastk/fastk": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "fastk/histex": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "freebayes": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/freebayes/freebayes.diff"
                    },
                    "gatk4/mergevcfs": {
                        "branch": "master",
                        "git_sha": "643756685546fa61f5c8fba439af746c090b9180",
                        "installed_by": ["modules"]
                    },
                    "genescopefk": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "gfastats": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/gfastats/gfastats.diff"
                    },
                    "gunzip": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "hifiasm": {
                        "branch": "master",
                        "git_sha": "07b737b47d33d8d980e5e0c09736764f450980a3",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/hifiasm/hifiasm.diff"
                    },
                    "merquryfk/merquryfk": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "minimap2/align": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
                    },
                    "mitohifi/findmitoreference": {
                        "branch": "master",
                        "git_sha": "f52220e84bfc16a8616a5bb3d6f5bc67d601bdce",
                        "installed_by": ["modules"]
                    },
                    "mitohifi/mitohifi": {
                        "branch": "master",
                        "git_sha": "c607e74f7aa72eb7cb7cc0a1454f97d3907e8d84",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/mitohifi/mitohifi/mitohifi-mitohifi.diff"
                    },
                    "pretextmap": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "pretextsnapshot": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/pretextsnapshot/pretextsnapshot.diff"
                    },
                    "purgedups/calcuts": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/purgedups/calcuts/purgedups-calcuts.diff"
                    },
                    "purgedups/getseqs": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "purgedups/pbcstat": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "purgedups/purgedups": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "purgedups/splitfa": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/collate": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "samtools/faidx": {
                        "branch": "master",
                        "git_sha": "fd742419940e01ba1c5ecb172c3e32ec840662fe",
                        "installed_by": ["modules"]
                    },
                    "samtools/fixmate": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "samtools/flagstat": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/idxstats": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/index": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/markdup": {
                        "branch": "master",
                        "git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
                        "installed_by": ["modules"]
                    },
                    "samtools/merge": {
                        "branch": "master",
                        "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
                        "installed_by": ["modules"]
                    },
                    "samtools/sort": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/stats": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/view": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "seqtk/subseq": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/seqtk/subseq/seqtk-subseq.diff"
                    },
                    "yahs": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    }
                }
            }
        }
    }
}