Solution:
the time step needs to be divisible by the number of seconds in a day (86400), Example: I was using 3000 but 86400/3000=28.8 so I should be 3200 -> 86400/3200 = 27
Solution:
The time-step is to large, reduce the size. Also: refer to: http://www.hector.ac.uk/cse/distributedcse/reports/nemo/nemo_notes/node46.html
Error because of incorrect activatation of GM (Gent McWilliams Paramterization for eddies) - defined cpp keys ldfeiv and ldfslp set rn_aeiv _0=500.
Solution:
Change operator from Bilaplacian to laplacian and diffusion from horizontal to iso-neutral.
Northern Boundary Condition
At the dx=100km we had issues with reaching steady state temperature. The issue was at the northern boundary restoring, because at this coarse resolution the sponge layer needed to be widen to include more points. 2800- 2600.