Chan Zuckerberg Initiative

All

262 repositories

cz-benchmarks
Public
cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.
Python
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Other
•3•14•25•14•Updated Jun 17, 2025Jun 17, 2025
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
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MIT License
•5•4•7•21•Updated Jun 17, 2025Jun 17, 2025
platformics
Public
Codegen Python GraphQL Entity Framework
Python
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MIT License
•0•6•14•4•Updated Jun 17, 2025Jun 17, 2025
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
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MIT License
•15•73•258•22•Updated Jun 17, 2025Jun 17, 2025
camelot
Public
Go
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MIT License
•0•1•0•0•Updated Jun 17, 2025Jun 17, 2025
data-guidance
Public
Data standards and policies
MIT License
•0•0•3•2•Updated Jun 17, 2025Jun 17, 2025
delta-share
Public
Go
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MIT License
•0•0•0•10•Updated Jun 17, 2025Jun 17, 2025
czid-workflows
Public
Portable WDL workflows for CZ ID production pipelines
Python
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MIT License
•10•44•5•10•Updated Jun 16, 2025Jun 16, 2025
single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
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MIT License
•28•45•33•3•Updated Jun 16, 2025Jun 16, 2025
github-actions
Public
A collection of re-usable GitHub Actions
HCL
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MIT License
•4•5•1•6•Updated Jun 16, 2025Jun 16, 2025
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
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MIT License
•4•16•61•3•Updated Jun 16, 2025Jun 16, 2025
edu-design-system
Public
Design system for Education Projects
react design-system style-dictionary
TypeScript
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MIT License
•4•32•1•1•Updated Jun 16, 2025Jun 16, 2025
happy
Public
Happy Path Deployment Tool
kubernetes infrastructure terraform
Go
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MIT License
•3•18•13•14•Updated Jun 16, 2025Jun 16, 2025
cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
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MIT License
•1•7•9•5•Updated Jun 16, 2025Jun 16, 2025
octopi
Public
Search for Protein 3D Coordinates in CryoET Tomograms
machine-learning deep-learning 3d-segmentation cryo-et
Jupyter Notebook
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Other
•0•1•1•0•Updated Jun 15, 2025Jun 15, 2025
miniwdl
Public
Workflow Description Language developer tools & local runner
wdl workflow-description-language
Python
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MIT License
•56•188•128•11•Updated Jun 15, 2025Jun 15, 2025
napari-hub
Public
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation
TypeScript
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MIT License
•19•52•97•14•Updated Jun 15, 2025Jun 15, 2025
cryoet-data-portal-neuroglancer
Public
CryoET Data Portal Neuroglancer configuration helper
Python
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MIT License
•2•1•1•4•Updated Jun 13, 2025Jun 13, 2025
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
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MIT License
•13•24•271•13•Updated Jun 11, 2025Jun 11, 2025
czid-web
Public
Infectious Disease Sequencing Platform
science research biology sequencing computational-biology next-generation-sequencing bioinformatics-pipeline global-health virology infectious-diseases
TypeScript
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MIT License
•26•86•0•3•Updated Jun 10, 2025Jun 10, 2025
fogg
Public
Manage Infrastructure as Code with less pain.
terraform infrastructure-as-code infrastructure
Go
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MIT License
•19•299•38•4•Updated Jun 10, 2025Jun 10, 2025
superset
Public
Apache Superset is a Data Visualization and Data Exploration Platform
TypeScript
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Apache License 2.0
•15k•0•0•1•Updated Jun 10, 2025Jun 10, 2025
sci-components
Public
2021 Science Design System Component Library
react css theme design-system
TypeScript
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MIT License
•7•30•107•3•Updated Jun 10, 2025Jun 10, 2025
axe-storybook-testing
Public
Command line interface for testing Storybook stories for accessibility.
accessibility axe testing
TypeScript
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MIT License
•7•55•2•0•Updated Jun 10, 2025Jun 10, 2025
secret-scanning-review-action
Public
Action to detect if a secret is initially detected in a pull request
Python
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MIT License
•5•0•0•1•Updated Jun 10, 2025Jun 10, 2025
czid-bench
Public
CZ ID infectious disease benchmarking tools
idseq
Python
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MIT License
•1•0•3•2•Updated Jun 10, 2025Jun 10, 2025
copick-server
Public
Python
•2•0•0•2•Updated Jun 9, 2025Jun 9, 2025
cellxgene-census
Public
CZ CELLxGENE Discover Census
Jupyter Notebook
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MIT License
•27•102•99•18•Updated Jun 8, 2025Jun 8, 2025
aws-oidc
Public
AWS OIDC Federation
Go
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MIT License
•5•17•0•3•Updated Jun 7, 2025Jun 7, 2025
argo-helm-charts
Public
Smarty
•0•0•0•1•Updated Jun 6, 2025Jun 6, 2025