non-omv.yml

name: Non OMV tests

on:
  push:
    branches: [ master, development, experimental ]
  pull_request:
    branches: [ master, development, experimental ]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:      
      fail-fast: false
      matrix:
        python-version: [ 3.9 ]

    steps:
    - uses: actions/checkout@v4

    - name: Set up Python  ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version:  ${{ matrix.python-version }}

    - name: Install dependencies
      run: |
        pip install pyNeuroML pytest

    - name: Run some examples
      run: |
        echo "Running non OMV tests..."
        # Test analysis of channels using pynml-channelanalysis from PyNeuroML.
        cd ./NeuroML2/
        pynml-channelanalysis -temperature 34  -minV -55  -maxV 80  -duration 600  -clampBaseVoltage -55  -clampDuration 580  -stepTargetVoltage 10  -erev 50  -nogui  ./ca_boyle.channel.nml
        pynml-channelanalysis -temperature 34  -minV -55  -maxV 80  -duration 600  -clampBaseVoltage -55  -clampDuration 580  -stepTargetVoltage 10  -erev -55 -nogui  ./k_fast.channel.nml
        pynml-channelanalysis -temperature 34  -minV -55  -maxV 80  -duration 600  -clampBaseVoltage -55  -clampDuration 580  -stepTargetVoltage 10  -erev -55 -nogui  ./k_slow.channel.nml

        #Testing individual shell scripts
        py.test shell_script_tester.py

        # Test Python version of Boyle & Cohen model
        cd ../BoyleCohen2008/PythonSupport/Main_Version
        python vclamp.py -nogui
        python vclamp_decimal.py -nogui
        python compareToNeuroML2.py