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8 | 8 | better mixing when parameter are on different scales or the initial
|
9 | 9 | proposal scale is too large (PR #1492).
|
10 | 10 |
|
11 |
| -- Improve Laplace/AGHQ approximation in various ways, including use of |
12 |
| - nlminb for both inner and outer optimization (for better |
13 |
| - optimization performance), improving messaging and output naming, |
14 |
| - returning the log-likelihood and degrees of freedom for model selection |
15 |
| - calculations, and unifying control of optimization method and |
16 |
| - control at the build stage and through `updateSettings` (PR #1496). |
| 11 | +- Improve Laplace/AGHQ implementation in various ways, including use |
| 12 | + of nlminb for both inner and outer optimization (for better |
| 13 | + optimization performance), improved messaging and output naming, |
| 14 | + returning the log-likelihood and degrees of freedom for model |
| 15 | + selection calculations, and unified control of optimization method and |
| 16 | + other controls at either the build stage or through the `updateSettings` |
| 17 | + method (PR #1496). |
17 | 18 |
|
18 |
| -- Add BOBYQA as an optimization method available through `nimOptim` |
19 |
| - (PR #1496). |
| 19 | +- Add BOBYQA as an optimization method available through `nimOptim`, |
| 20 | + registered via `nimOptimMethod` (PR #1496). |
20 | 21 |
|
21 | 22 | - Prevent use of nimbleFunction method names and nimbleFunction
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22 | 23 | names that conflict with names in the nimble language (DSL) (PRs #1517
|
|
48 | 49 |
|
49 | 50 | ## BUG FIXES
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50 | 51 |
|
51 |
| -- Fix bug in caching values in `sampler_CRP` when maximum number of |
52 |
| - clusters exceeded that would cause incorrect sampling (albeit with the |
53 |
| - user having been warned that they should increase the maximum number |
| 52 | +- Fix bug in caching values in `sampler_CRP` when maximum number of |
| 53 | + clusters is exceeded, which would have caused incorrect sampling (albeit |
| 54 | + with the user having been warned that they should increase the maximum number |
54 | 55 | of clusters) (PR #1513).
|
55 | 56 |
|
56 |
| -- Fix issue preventing use of nimbleList elements in with `nimCat` (PR |
| 57 | +- Fix issue preventing use of nimbleList elements in `nimCat` (PR |
57 | 58 | #1518).
|
58 | 59 |
|
59 | 60 | - Prevent adaptation interval of one for various block samplers for
|
|
69 | 70 | which are partially observed (whose elements are partially but not
|
70 | 71 | entirely data) (PR #1489).
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71 | 72 |
|
72 |
| -- Turn of the use of `--preclean` during C++ compilation when |
| 73 | +- Turn off the use of `--preclean` during C++ compilation when |
73 | 74 | `nimbleExternalCall` is invoked to avoid removing .o files that
|
74 | 75 | might have been created by `Rcpp` (PR #1520).
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75 | 76 |
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76 |
| - |
77 | 77 | # CHANGES IN VERSION 1.2.1 (July 2024)
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78 | 78 |
|
79 | 79 | ## USER LEVEL CHANGES
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|
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