Description
I use the colabfold search pipeline to search the dimer fasta in examples
python3 scripts/colabfold_msa.py examples/dimer.fasta <path/to/colabfold_db> dimer_colabfold_msa --db1 uniref30_2103_db --db3 colabfold_envdb_202108_db --mmseqs_path <path/to/mmseqs>
subprocess error occurs
free(): corrupted unsorted chunks
Traceback (most recent call last):
File "/share/programs/miniconda3/envs/colabfold/bin/colabfold_search", line 8, in
sys.exit(main())
File "/share/programs/miniconda3/envs/colabfold/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 319, in main
mmseqs_search_monomer(
File "/share/programs/miniconda3/envs/colabfold/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 94, in mmseqs_search_monomer
run_mmseqs(mmseqs, ["expandaln", base.joinpath("qdb"), dbbase.joinpath(f"{uniref_db}{dbSuffix1}"), base.joinpath("res"), dbbase.joinpath(f"{uniref_db}{dbSuffix2}"), base.joinpath("res_exp"), "--db-load-mode", str(db_load_mode), "--threads", str(threads)] + expand_param)
File "/share/programs/miniconda3/envs/colabfold/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 25, in run_mmseqs
subprocess.check_call([mmseqs] + params)
File "/share/programs/miniconda3/envs/colabfold/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '[PosixPath('/share/programs/ColabFold/localcolabfold/colabfold-conda/bin/mmseqs'), 'expandaln', PosixPath('msas/qdb'), PosixPath('/share/programs/Colab_MSA/uniref30_2202_db.idx'), PosixPath('msas/res'), PosixPath('/share/programs/Colab_MSA/uniref30_2202_db.idx'), PosixPath('msas/res_exp'), '--db-load-mode', '0', '--threads', '64', '--expansion-mode', '0', '-e', 'inf', '--expand-filter-clusters', '1', '--max-seq-id', '0.95']' died with <Signals.SIGABRT: 6>.