Error tab not recognized "Expected at least 12 fields"

[avishai987]

Hi, I am trying to run bed2gtf on a bed file created with bedtools and got:

(bed2gtf) avishaiw@glacier-28:/avishai.wizel/eRNA$ bed2gtf -b PMID_33564857_non_exons_peaks.bed -o PMID_33564857_non_exons_peaks.gtf --no-gene

##### BED2GTF #####
A fast BED-to-GTF converter written in Rust.
Repository: https://github.com/alejandrogzi/bed2gtf
Feel free to contact the developer if any issue/bug is found.
Version: 1.9.3

2025-02-05T15:39:02.329Z INFO  [bed2gtf] Using 1 threads
Error: "Expected at least 12 fields, found 1\t87274\t87507\tPMID_33564857_peak_7\t125\t.\t6.89449\t14.4651\t12.5712\t115"

although "\t" should be recognized as tab...
Thanks

[alejandrogzi]

Hey @avishai987

Could you please share your .bed file or a small sample of it?

Cheers,
Alejandro